Plotting environmental effects on species

Usage

envplot(
  object,
  include_intercept = FALSE,
  nrow = NULL,
  y_labels = NULL,
  plotfun = "intervals",
  widths = NULL,
  species = NULL,
  preds = NULL,
  ...
)

Arguments

object: The jsdmStanFit model object
include_intercept: Whether to include the intercept in the plots
nrow: The number of rows within the plot
y_labels: Which plots should have annotated y axes. Needs to be given as an integer vector
plotfun: Which plot function from mcmc_plot should be used, by default "intervals"
widths: The widths of the plots
species: The species to be included in the plot, by default NULL and all species are included. Should be specified as a vector of species names or numeric indices.
preds: The predictors to be included in the plot, by default NULL and all predictors are included. Should be specified as a vector of predictor names or numeric indices.
...: Other arguments that are passed to the MCMC plotting function (see mcmc_plot.jsdmStanFit())

Value

An object of class "bayesplot_grid", for more information see bayesplot::bayesplot_grid()