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A package for fitting joint species distribution models (jSDMs) in Stan.

This package can be used to both simulate and fit data according to a multivariate generalised linear mixed model (MGLMM) or a generalised linear latent variable model (GLLVM). All models are fit using the rstan package. Summary functions are provided, as are interfaces to the bayesplot plotting functions

References

Stan Development Team (NA). RStan: the R interface to Stan. R package version 2.26.1. https://mc-stan.org