cyto_ml package

Subpackages

• cyto_ml.data package
  • Submodules
  • cyto_ml.data.db_config module
  • cyto_ml.data.flowcam module
    • FlowCamSession
      • FlowCamSession.do_decollage()
      • FlowCamSession.output_dir()
      • FlowCamSession.read_metadata()
    • exif_headers()
    • headers_from_filename()
    • lst_metadata()
    • parse_filename()
    • read_headers()
    • window_slice()
    • write_headers()
  • cyto_ml.data.image module
    • ImageProcessingError
    • base_normalise()
    • convert_3_band()
    • load_image()
    • load_image_from_url()
    • normalise_flowlr()
    • prepare_image()
    • resize_normalise()
  • cyto_ml.data.labels module
  • cyto_ml.data.s3 module
    • boto3_client()
    • bucket_keys()
    • image_index()
  • cyto_ml.data.vectorstore module
    • ChromadbStore
      • ChromadbStore.add()
      • ChromadbStore.client
      • ChromadbStore.closest()
      • ChromadbStore.embeddings()
      • ChromadbStore.get()
      • ChromadbStore.ids()
    • PostgresStore
      • PostgresStore.add()
      • PostgresStore.closest()
      • PostgresStore.embeddings()
      • PostgresStore.get()
      • PostgresStore.ids()
    • SQLiteVecStore
      • SQLiteVecStore.add()
      • SQLiteVecStore.classes()
      • SQLiteVecStore.closest()
      • SQLiteVecStore.embeddings()
      • SQLiteVecStore.get()
      • SQLiteVecStore.ids()
      • SQLiteVecStore.labelled()
      • SQLiteVecStore.load_ext()
      • SQLiteVecStore.load_schema()
    • VectorStore
      • VectorStore.add()
      • VectorStore.closest()
      • VectorStore.embeddings()
      • VectorStore.get()
      • VectorStore.ids()
    • deserialize()
    • serialize_f32()
    • vector_store()
  • Module contents
• cyto_ml.models package
  • Submodules
  • cyto_ml.models.api module
    • load_models()
    • resnet18_3()
    • resnet50()
    • root()
  • cyto_ml.models.utils module
    • flat_embeddings()
    • resnet18()
  • Module contents

Module contents