Plot the smooth effect of any spline within a model

Usage

smoothplot(
  object,
  ndraws = 20,
  alpha = 0.4,
  draw_ids = NULL,
  summarise = NULL,
  type = "link",
  facet_args = list(),
  select_smooths = NULL
)

Arguments

object: The jsdmStanFit model object
ndraws: The number of draws of the predictor
alpha: The alpha (transparency) value of the lines
draw_ids: Which draws to include in plot (overrides ndraws)
summarise: Whether to include a summary, by default NULL i.e. no summary. Can also be given as the name of a function (e.g. "mean"). Note that this summarisation only occurs over the number of draws specified.
type: Whether to return plot on the link scale (default) or the response scale
facet_args: Argument passed to ggplot2::facet_wrap(), specified as a list
select_smooths: Which plots to include, given either as NULL (i.e. plot all smooths) or as a list containing two numeric vectors named "site" and "species" representing the indices of the site-specific smooths to plot and the species-specific smooths to plot

Value

a list of ggplot objects